| | NPHP3, NPHP3-ACAD11 (S1314T) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related Meckel-like syndrome +5 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | |
| | NPHP3, NPHP3-ACAD11 (S1252R) | Single nucleotide variant (non-coding transcript variant +1 more) | NPHP3-related condition +5 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +4 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | GConflicting classifications of pathogenicity |
| | | Deletion (splice acceptor variant) | Nephronophthisis 3 +5 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (intron variant) | NPHP3-related Meckel-like syndrome +4 more | |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +1 more | GConflicting classifications of pathogenicity |
| | NPHP3, NPHP3-ACAD11 (R702*) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis +5 more | |
| | NPHP3, NPHP3-ACAD11 (M635V) | Single nucleotide variant (missense variant) | Nephronophthisis | |
| | | Single nucleotide variant (intron variant) | not specified +5 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +5 more | |
| | NPHP3, NPHP3-ACAD11 (A150V) | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +5 more | |
| | LOC129937586, NPHP3 +2 more (A52T) | Single nucleotide variant (non-coding transcript variant +1 more) | Nephronophthisis 3 +6 more | GConflicting classifications of pathogenicity |
| | NPHP3-ACAD11, NPHP3-AS1 +2 more | Single nucleotide variant (non-coding transcript variant +1 more) | Kidney disorder +6 more | GConflicting classifications of pathogenicity |